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Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundAggregation of high-throughput biological data using pathway-based approaches is useful to associate molecular results to functional feature......

JIF:2.05

DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundGenome-scale models of metabolism and macromolecular expression (ME models) enable systems-level computation of proteome allocation coupled ......

JIF:2.05

Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundThe formation of acetate by fast-growing Escherichia coli (E. coli) is a commonly observed phenomenon, often referred to as overflow metabol......

JIF:2.05

Constructing network topologies for multiple signal-encoding functions

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundCells use signaling protein networks to sense their environment and mediate specific responses. Information about environmental stress is us......

JIF:2.05

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundA recurrent problem in genome-scale metabolic models (GEMs) is to correctly represent lipids as biomass requirements, due to the numerous of......

JIF:2.05

Plasmodium vivax readiness to transmit: implication for malaria eradication

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundThe lack of a continuous long-term in vitro culture system for Plasmodium vivax severely limits our knowledge of pathophysiology of the most......

JIF:2.05

Multi-omics integration reveals molecular networks and regulators of psoriasis

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundPsoriasis is a complex multi-factorial disease, involving both genetic susceptibilities and environmental triggers. Genome-wide association ......

JIF:2.05

An agent-based model of the Notch signaling pathway elucidates three levels of complexity in the determination of developmental patterning

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundThe Notch signaling pathway is involved in cell fate decision and developmental patterning in diverse organisms. A receptor molecule, Notch ......

JIF:2.05

Model-based virtual patient analysis of human liver regeneration predicts critical perioperative factors controlling the dynamic mode of response to resection

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundLiver has the unique ability to regenerate following injury, with a wide range of variability of the regenerative response across individual......

JIF:2.05

miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

Background: Parkinson's disease (PD) is the second most common neurodegenerative disease, and it is a multifactorial disease with no definite diagnost......

JIF:2.05

Use of genome-scale models to get new insights into the marine actinomycete genus Salinispora

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

Background: There is little published regarding metabolism of Salinispora species. In continuation with efforts performed towards this goal, this stud......

JIF:2.05

A mathematical model to estimate cholesterylester transfer protein (CETP) triglycerides flux in human plasma

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundCholesterylester transfer protein (CETP) modulates the composition of various lipoproteins associated with cardiovascular disease. Despite i......

JIF:2.05

How to prevent viremia rebound? Evidence from a PRRSv data-supported model of immune response

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundUnderstanding what determines the between-host variability in infection dynamics is a key issue to better control the infection spread. In p......

JIF:2.05

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