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Resolving phylogeny and polyploid parentage using genus-wide genome-wide sequence data from birch trees

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 160 ()

Numerous plant genera have a history including frequent hybridisation and polyploidisation (allopolyploidisation), which means that their phylogeny is......

Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 161 ()

Traditional phylogenies inferred from chloroplast DNA fragments have not obtained a well-resolved evolutionary history for the backbone of Apioideae, ......

UCE Phylogenomics, detection of a putative hybrid population, and one older mitogenomic node age of Batrachuperus salamanders

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 163 ()

The prevalence of incomplete lineage sorting complicates the examination of hybridization and species-level paraphyly with gene trees of a small numbe......

The IS630/Tc1/mariner transposons in three ctenophore genomes

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 163 ()

Transposable elements (TEs) exert a significant effect on the structure and functioning of the genomes and also serve as a source of the new genes. Th......

Whole genome sequencing and comparative genomics analysis of Pectobacterium carotovorum identifies key pathogenic genes

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 162 ()

Based on Single molecule real time (SMRT) sequencing technology, the high-quality whole genome sequence of Pectobacterium carotovorum (PC1) was obtain......

Phylogenomic resolution of the Ceratitis FARQ complex (Diptera: Tephritidae)

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 161 ()

The Ceratitis FARQ complex (formerly FAR complex) includes four frugivorous tephritids, Ceratitis fasciventris, C. anonae, C. rosa and C. quilicii, th......

Comparative mitogenomics and phylogenetics of the stinging wasps (Hymenoptera: Aculeata)

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 159 ()

The stinging wasps (Hymenoptera: Aculeata) include diverse groups such as vespid wasps, ants and bees. Phylogenetic relationships among major lineages......

Phylogenomics and evolutionary history of Oreobates (Anura: Craugastoridae) Neotropical frogs along elevational gradients

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 161 ()

Mountain ranges offer opportunities for understanding how species evolved and diversified across different environmental conditions. Neotropical frogs......

Divergent evolution profiles of DD37D and DD39D families of Tc1/mariner transposons in eukaryotes

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 161 ()

DNA transposons play a significant role in shaping the size and structure of eukaryotic genomes. The Tc1/mariner transposons are the most diverse and ......

Plastid genomes and phylogenomics of liverworts (Marchantiophyta): Conserved genome structure but highest relative plastid substitution rate in land plants

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 161 ()

With some 7300 species of small nonvascular spore-producing plants, liverworts represent one of the major lineages of land plants. Although multi-locu......

Evolution of protective symbiosis in palaemonid shrimps (Decapoda: Caridea) with emphases on host spectrum and morphological adaptations

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 162 ()

Palaemonidae is the most speciose caridean shrimp family, with its huge biodiversity partially generated via symbiosis with various marine invertebrat......

Phylogeny and evolution of mycophagy in the Zygothrica genus group (Diptera: Drosophilidae)

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 163 ()

Despite numerous phylogenetic studies on the family Drosophilidae, relationships among some important lineages are still poorly resolved. An example i......

Large-scale phylogenomic analysis provides new insights into the phylogeny of the class Oligohymenophorea (Protista, Ciliophora) with establishment of a new subclass Urocentria nov. subcl

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 159 ()

The class Oligohymenophorea is one of the most diverse assemblage of ciliated protists, which are particularly important in fundamental biological stu......

Another blow to the conserved gene order in Annelida: Evidence from mitochondrial genomes of the calcareous tubeworm genus Hydroides

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 160 ()

Mitochondrial genomes are frequently applied in phylogenetic and evolutionary studies across metazoans, yet they are still poorly represented in many ......

Morphometric and population genomic evidence for species divergence in the Chimarrichthys fish complex of the Tibetan Plateau

期刊: MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021; 159 ()

The uplift of the Tibetan Plateau altered the environmental conditions of the local area substantially. Here, we conducted a comprehensive investigati......

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