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Identifying the essential nodes in network pharmacology based on multilayer network combined with random walk algorithm

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 114 ()

Compared with the general complex network, the multilayer network is more suitable for the description of reality. It can be used as a tool of network......

A tongue features fusion approach to predicting prediabetes and diabetes with machine learning

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 115 ()

Background: Diabetics has become a serious public health burden in China. Multiple complications appear with the progression of diabetics pose a serio......

Knowledge-aware multi-center clinical dataset adaptation: Problem, method, and application

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 115 ()

Adaptable utilization of clinical data collected from multiple centers, prompted by the need to overcome the shifts between the dataset distributions,......

Improving Chinese electronic medical record retrieval by field weight assignment, negation detection, and re-ranking

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 119 ()

The technique of information retrieval has been widely used in electronic medical record (EMR) systems. It's a pity that most existing methods have no......

FeARH: Federated machine learning with anonymous random hybridization on electronic medical records

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 117 ()

Electrical medical records are restricted and difficult to centralize for machine learning model training due to privacy and regulatory issues. One so......

Biomedical named entity recognition using BERT in the machine reading comprehension framework

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 118 ()

Recognition of biomedical entities from literature is a challenging research focus, which is the foundation for extracting a large amount of biomedica......

Clinical decision-making framework against over-testing based on modeling implicit evaluation criteria

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 119 ()

Different statistical methods include various subjective criteria that can prevent over-testing. However, no unified framework that defines generalize......

Alzheimer's disease diagnosis framework from incomplete multimodal data using convolutional neural networks

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 121 ()

Alzheimer's disease (AD) is a severe irreversible neurodegenerative disease that has great sufferings on patients and eventually leads to death. Early......

SURVFIT: Doubly sparse rule learning for survival data

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 117 ()

Survival data analysis has been leveraged in medical research to study disease morbidity and mortality, and to discover significant bio-markers affect......

Extracting chemical-induced disease relation by integrating a hierarchical concentrative attention and a hybrid graph-based neural network

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 121 ()

Extracting the chemical-induced disease relation from literatures is important for biomedical research. On one hand, it is challenging to capture the ......

Disease network delineates the disease progression profile of cardiovascular diseases

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 115 ()

Objective: As Electronic Health Records (EHR) data accumulated explosively in recent years, the tremendous amount of patient clinical data provided op......

Incorporating multi-level CNN and attention mechanism for Chinese clinical named entity recognition

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 116 ()

Named entity recognition (NER) is a fundamental task in Chinese natural language processing (NLP) tasks. Recently, Chinese clinical NER has also attra......

Identification of pediatric respiratory diseases using a fine-grained diagnosis system

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 117 ()

Respiratory diseases, including asthma, bronchitis, pneumonia, and upper respiratory tract infection (RTI), are among the most common diseases in clin......

An effective feature extraction method based on GDS for atrial fibrillation detection

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 119 ()

Atrial fibrillation (AF) is a common and extremely harmful arrhythmia disease. Automatic detection of AF based on ECG helps accurate and timely detect......

Reservoir hosts prediction for COVID-19 by hybrid transfer learning model

期刊: JOURNAL OF BIOMEDICAL INFORMATICS, 2021; 117 ()

The recent outbreak of COVID-19 has infected millions of people around the world, which is leading to the global emergency. In the event of the virus ......

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