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Constructing network topologies for multiple signal-encoding functions

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundCells use signaling protein networks to sense their environment and mediate specific responses. Information about environmental stress is us......

JIF:2.05

miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

Background: Parkinson's disease (PD) is the second most common neurodegenerative disease, and it is a multifactorial disease with no definite diagnost......

JIF:2.05

How to schedule VEGF and PD-1 inhibitors in combination cancer therapy?

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundOne of the questions in the design of cancer clinical trials with combination of two drugs is in which order to administer the drugs. This i......

JIF:2.05

Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundImproving efficiency of disease diagnosis based on phenotype ontology is a critical yet challenging research area. Recently, Human Phenotype......

JIF:2.05

A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundSingle-cell RNA sequencing (scRNAseq) data always involves various unwanted variables, which would be able to mask the true signal to identi......

JIF:2.05

Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundSystematic fusion of multiple data sources for Gene Regulatory Networks (GRN) inference remains a key challenge in systems biology. We incor......

JIF:2.05

Anti-TNF-alpha treatment-related pathways and biomarkers revealed by transcriptome analysis in Chinese psoriasis patients

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundAnti-tumor necrosis factor alpha (TNF- ) therapy has made a significant impact on treating psoriasis. Despite these agents being designed to......

JIF:2.05

FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs

期刊: BMC SYSTEMS BIOLOGY, 2019; 13 ()

BackgroundBiological experiments have confirmed the association between miRNAs and various diseases. However, such experiments are costly and time con......

JIF:2.05

A multi-context learning approach for EEG epileptic seizure detection

期刊: BMC SYSTEMS BIOLOGY, 2018; 12 ()

Background: Epilepsy is a neurological disease characterized by unprovoked seizures in the brain. The recent advances in sensor technologies allow res......

JIF:2.05

Recognition of bacteria named entity using conditional random fields in Spark

期刊: BMC SYSTEMS BIOLOGY, 2018; 12 ()

Background: Microbe plays a crucial role in the functional mechanism of an ecosystem. Identification of the interactions among microbes is an importan......

JIF:2.05

Instantaneous mutation rate in cancer initiation and progression

期刊: BMC SYSTEMS BIOLOGY, 2018; 12 ()

Background: Cancer is one of the leading causes for the morbidity and mortality worldwide. Although substantial studies have been conducted theoretica......

JIF:2.05

An interpretable boosting model to predict side effects of analgesics for osteoarthritis

期刊: BMC SYSTEMS BIOLOGY, 2018; 12 ()

Background: Osteoarthritis (OA) is the most common disease of arthritis. Analgesics are widely used in the treat of arthritis, which may increase the ......

JIF:2.05

A multiple kernel density clustering algorithm for incomplete datasets in bioinformatics

期刊: BMC SYSTEMS BIOLOGY, 2018; 12 ()

Background: While there are a large number of bioinformatics datasets for clustering, many of them are incomplete, i.e., missing attribute values in s......

JIF:2.05

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