Context-aware seeds for read mapping

期刊： ALGORITHMS FOR MOLECULAR BIOLOGY, 2020; 15 (1)

Motivation Most modern seed-and-extend NGS read mappers employ a seeding scheme that requires extracting t non-overlapping seeds in each read in order......

A fast and accurate enumeration-based algorithm for haplotyping a triploid individual

期刊： ALGORITHMS FOR MOLECULAR BIOLOGY, 2018; 13 ()

Background: Haplotype assembly, reconstructing haplotypes from sequence data, is one of the major computational problems in bioinformatics. Most of th......

JIF：1.59

HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing

期刊： ALGORITHMS FOR MOLECULAR BIOLOGY, 2017; 12 ( )

Background: Multiple sequence alignment (MSA) plays a key role in biological sequence analyses, especially in phylogenetic tree construction. Extreme ......

JIF：1.54