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Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences

Wang, ZY; Wang, Y; Fuhrman, JA; Sun, FZ; Zhu, SF

Zhu, SF (corresponding author), Fudan Univ, Sch Comp Sci, Shanghai Key Lab Intelligent Informat Proc, Shanghai 200433, Peoples R China.; Sun, FZ; Zhu, SF (corresponding author), Fudan Univ, Inst Sci & Technol Brain Inspired Intelligence, Shanghai 200433, Peoples R China.; Sun, FZ (corresponding author), Univ Southern Calif, Dept Biol Sci, Quantitat & Computat Biol Program, Los Angeles, CA 90007 USA.

BRIEFINGS IN BIOINFORMATICS, 2020; 21 (3): 777

Abstract

In metagenomic studies of microbial communities, the short reads come from mixtures of genomes. Read assembly is usually an essential first step for t......

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